Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015817407.1_cds_XP_016499165.1_13117
CDS Infomation

[gene=LOC107817802] [db_xref=GeneID:107817802] [protein=putative late blight resistance protein homolog R1B-16 isoform X3] [protein_id=XP_016499165.1] [location=join(5136..5331,5467..7376,7455..7520,8558..8560)] [gbkey=CDS]
Sequence

ATGTCTGACAAGAGTTTGGAGATTAGGCCCTGCTTGGTGGCTGAGCCATCTAAACATATG
CAAAATCGACAGAGTGACCCTGTGAATAATGAGGAGATAGTTGGTTTTGAGAAAGATGCT
GAAACAATAATTAAGCGTCTAAATGAAGGAAAAAAGGAGCTAGACGTCATCCCAATTGTT
GGGATGGCTGGACAAGGTTCCAAGGCCAAGGTAGATGAGGTTGGCGAACTTGCTGACATT
TTGAGGAAAAGATTAATTGGCACGAGATATCTGATTGTCTTGGATGATATGTGGGATATT
AAAGCATGGGAAGATTTAAGATTATCTTTCCCAAATGGTGAAACAGGAAGTAAAATAATA
GTAACAACCCGACTAGAGGAAGTAGGTAAGCAGGTCAAGCACGATACCGATCCTTATTCT
CTCCCATTCCTCACACGCGATGAGAGTCTAATGTTGTTGCAAAAAAAAGTGTTTCAACAG
GAAGGTTGCACACCTGAACTACACAACGTAAGTTTAGCAGTTGCAGAAAGATGCAAAGGA
TTGCCTTTGGTGATTATCTTGGTAGCTGGAATAATCAAAAGCAAGAAAATGGAAGAATCT
TGGTGGCATGAGGTTAAAAATTCTCTACTTTCCTATCTAGGTGAGTCAGAAGGATATAGT
CTTTCGACTATGCAGTTAAGTTATGACAACTTATCCGATTCTTTAAAACCTTGCCTTCTT
TATATGGGGATGTTTCAGGAGGACGCGAGAATTCCAGTGTCTAAATTAATAAGTTTATGG
ATCGCGGAAGGCTTCGTGCAGAACATTGAATATGAGAAATCAATGGAAGAAGCAGCTGAA
GGTTACTTGATGGATCTCATTAGCAGTAATGTGGTGATGGTTGAGAAGAGAAGCTATAGC
GGTAAAGCCAAATACTGCCAGGTTCATGATGTCGTACTTCACTTTTGCTTGGAGAAAAGC
AGAGAAGAAAAATTTATGTTGGCAGTGAAGGGGAATTATAACAACTTTCAACCTTCTCAT
TGGAAGGTAACTCGATTGAGCATCACTGTTACTGATGAACTTTCTGCGTGTGCATTGCTC
ACAGCGGAGCCTTTCCATCAACATTTAAGGTCACTGATAACAAATGATGGAGGAGAATAT
TTGCAATGGAATCCTTTCCCTCAGATTAGTAAATTGGGATTTCTTAAGGTGTTGGATTTG
AGTTCTTATGAAGTGGTTCCCTTGTCATCAATTATACTGCATCCACTGATTTATCTGAAG
TACCTCGCAGTTAGGACAGATCAATTTGATTTCCATCCGGAATCACATCTACGCCATCTT
GAAACTTTAATTGTTCTCTCTTCCAAGAGCGTAGTTTTACCCCCGATTTTTTGGAAAATG
GAAAAACTAAGACATGTTGAGATTACTGGAGTTAATTTTTATTTGAAAAACATTAAACAG
GGGATCTTTGAAGAATCCTCTAAATTGGAAAATTTGAGGATATTAAGGGATGTTTGTTAT
CCAGCTAATGATGGTGAATGGATGGATGGCTTATTACAGAGGTGTCCTAACATTCAAAAT
CTTAGGCTCACTATCTCTTGGCTTAATTCTAGAGAGATTTGTACTTTCAGTCCCAAACTA
GATAGTCTTACTCGGCTGCAATTACTTGACCTTTCCTTTGAGGGTTGGAGATTTAGTATA
ACTGAGTTACACCTTCCTTCAAATCTAAAGAAGTTGAAACTTGAAGGGCCTCATATAGTA
AGCGCAGCTCCCTCAATTGCGGGACTACCAAATCTAGAGTATCTTAAATTAGAGGATTGG
GGAATTAAGTCGGAAGAGTGGTGCCTCAAAGATATCAAGTTCAATAATCTTAAGTTGTTG
AAACTGGTGTCGTTAGGTATCTCAAGGTTGGATGACCCAGAGGAATCTTTTCCTATGCTT
GAAACGCTTGTTATAAAAATGTGTCACAAGCTTGAGGAGATTCACCCAAGCTTTGCAGAT
ATTGAAACATTGCAACAGATTAAGTTGATTGGGCGCAGGCCACAAACTCTGGAGCCTTCA
GCTGTGAAACTTAAGGAAGACATCGAAGAGATTGAAGGATGCAGCCGTCTTACCCTCATT
ATGGACGTTTGGATCAGCAAGCAACATAGCCGGCAGCAGCGAGGTCAAGCAAGAGCTCCT
CTACGGATCATGTGA

Peptide Sequence

PEP ID

XP_016499165.1
PEP Infomation

PREDICTED: putative late blight resistance protein homolog R1B-16 isoform X3 [Nicotiana tabacum]
Sequence

MSDKSLEIRPCLVAEPSKHMQNRQSDPVNNEEIVGFEKDAETIIKRLNEGKKELDVIPIV
GMAGQGSKAKVDEVGELADILRKRLIGTRYLIVLDDMWDIKAWEDLRLSFPNGETGSKII
VTTRLEEVGKQVKHDTDPYSLPFLTRDESLMLLQKKVFQQEGCTPELHNVSLAVAERCKG
LPLVIILVAGIIKSKKMEESWWHEVKNSLLSYLGESEGYSLSTMQLSYDNLSDSLKPCLL
YMGMFQEDARIPVSKLISLWIAEGFVQNIEYEKSMEEAAEGYLMDLISSNVVMVEKRSYS
GKAKYCQVHDVVLHFCLEKSREEKFMLAVKGNYNNFQPSHWKVTRLSITVTDELSACALL
TAEPFHQHLRSLITNDGGEYLQWNPFPQISKLGFLKVLDLSSYEVVPLSSIILHPLIYLK
YLAVRTDQFDFHPESHLRHLETLIVLSSKSVVLPPIFWKMEKLRHVEITGVNFYLKNIKQ
GIFEESSKLENLRILRDVCYPANDGEWMDGLLQRCPNIQNLRLTISWLNSREICTFSPKL
DSLTRLQLLDLSFEGWRFSITELHLPSNLKKLKLEGPHIVSAAPSIAGLPNLEYLKLEDW
GIKSEEWCLKDIKFNNLKLLKLVSLGISRLDDPEESFPMLETLVIKMCHKLEEIHPSFAD
IETLQQIKLIGRRPQTLEPSAVKLKEDIEEIEGCSRLTLIMDVWISKQHSRQQRGQARAP
LRIM

Transcript Sequence

Gene sequence data has not been registered.